Phylogenetic relationships of Pythium and Phytophthora species based on ITS rDNA, cytochrome oxidase II and beta-tubulin gene sequences.
Identifieur interne : 001F40 ( Main/Exploration ); précédent : 001F39; suivant : 001F41Phylogenetic relationships of Pythium and Phytophthora species based on ITS rDNA, cytochrome oxidase II and beta-tubulin gene sequences.
Auteurs : Neilyn O. Villa [Philippines] ; Koji Kageyama ; Takahiro Asano ; Haruhisa SugaSource :
- Mycologia [ 0027-5514 ]
Descripteurs français
- KwdFr :
- ADN fongique (analyse), ADN fongique (isolement et purification), Analyse de séquence d'ADN (MeSH), Complexe IV de la chaîne respiratoire (génétique), Données de séquences moléculaires (MeSH), Espaceur de l'ADN ribosomique (analyse), Espaceur de l'ADN ribosomique (génétique), Maladies des plantes (microbiologie), Phylogenèse (MeSH), Phytophthora (classification), Phytophthora (enzymologie), Phytophthora (génétique), Pythium (classification), Pythium (enzymologie), Pythium (génétique), Spécificité d'espèce (MeSH), Tubuline (génétique).
- MESH :
- analyse : ADN fongique, Espaceur de l'ADN ribosomique.
- enzymologie : Phytophthora, Pythium.
- génétique : Complexe IV de la chaîne respiratoire, Espaceur de l'ADN ribosomique, Phytophthora, Pythium, Tubuline.
- isolement et purification : ADN fongique.
- microbiologie : Maladies des plantes.
- Analyse de séquence d'ADN, Données de séquences moléculaires, Phylogenèse, Spécificité d'espèce.
English descriptors
- KwdEn :
- DNA, Fungal (analysis), DNA, Fungal (isolation & purification), DNA, Ribosomal Spacer (analysis), DNA, Ribosomal Spacer (genetics), Electron Transport Complex IV (genetics), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Phytophthora (classification), Phytophthora (enzymology), Phytophthora (genetics), Plant Diseases (microbiology), Pythium (classification), Pythium (enzymology), Pythium (genetics), Sequence Analysis, DNA (MeSH), Species Specificity (MeSH), Tubulin (genetics).
- MESH :
- chemical , analysis : DNA, Fungal, DNA, Ribosomal Spacer.
- chemical , genetics : DNA, Ribosomal Spacer, Electron Transport Complex IV, Tubulin.
- chemical , isolation & purification : DNA, Fungal.
- classification : Phytophthora, Pythium.
- enzymology : Phytophthora, Pythium.
- genetics : Phytophthora, Pythium.
- microbiology : Plant Diseases.
- Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA, Species Specificity.
Abstract
Fifty-eight isolates representing 39 Pythium species and 17 isolates representing nine Phytophthora species were chosen to investigate intra- and intergeneric relationships with sequence analysis of three genomic areas. The internal transcribed spacer regions (ITS1 and ITS2), including the 5.8S gene of the ribosomal DNA were PCR amplified with the universal primers ITS1 and ITS4. On the other hand 563 bp of the cytochrome oxidase II (cox II) gene was amplified with the primer pair FM66 and FM58 for Pythium and FM75 and FM78 for Phytophthora. The 658 bp partial beta-tubulin gene was amplified with the forward primer BT5 and reverse primer BT6. Maximum parsimony analysis of the three DNA regions revealed four major clades, reflective of sporangial morphology. Clade 1 was composed of Pythium isolates that bear filamentous to lobulate sporangia. Clade 2 represents Pythium isolates that bear globose to spherical zoosporangia or spherical hyphal swellings. Meanwhile Phytophthora isolates were lumped into Clade 3 wherein the papillate, semipapillate and nonpapillate species occupied separate subclades. Lastly, Clade 4 was composed of Pythium species that bear subglobose sporangia resembling the papillate sporangia observed in Phytophthora. Hence a number of species (Ph. undulata, P. helicoides, P. ostracodes, P. oedochilum and P. vexans) have been proposed to be the elusive intermediate species in the Pythium-to-Phytophthora evolutionary line.
DOI: 10.3852/mycologia.98.3.410
PubMed: 17040070
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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The internal transcribed spacer regions (ITS1 and ITS2), including the 5.8S gene of the ribosomal DNA were PCR amplified with the universal primers ITS1 and ITS4. On the other hand 563 bp of the cytochrome oxidase II (cox II) gene was amplified with the primer pair FM66 and FM58 for Pythium and FM75 and FM78 for Phytophthora. The 658 bp partial beta-tubulin gene was amplified with the forward primer BT5 and reverse primer BT6. Maximum parsimony analysis of the three DNA regions revealed four major clades, reflective of sporangial morphology. Clade 1 was composed of Pythium isolates that bear filamentous to lobulate sporangia. Clade 2 represents Pythium isolates that bear globose to spherical zoosporangia or spherical hyphal swellings. Meanwhile Phytophthora isolates were lumped into Clade 3 wherein the papillate, semipapillate and nonpapillate species occupied separate subclades. Lastly, Clade 4 was composed of Pythium species that bear subglobose sporangia resembling the papillate sporangia observed in Phytophthora. Hence a number of species (Ph. undulata, P. helicoides, P. ostracodes, P. oedochilum and P. vexans) have been proposed to be the elusive intermediate species in the Pythium-to-Phytophthora evolutionary line.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17040070</PMID><DateCompleted><Year>2006</Year><Month>12</Month><Day>07</Day></DateCompleted><DateRevised><Year>2019</Year><Month>11</Month><Day>10</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0027-5514</ISSN><JournalIssue CitedMedium="Print"><Volume>98</Volume><Issue>3</Issue><PubDate><MedlineDate>2006 May-Jun</MedlineDate></PubDate></JournalIssue><Title>Mycologia</Title><ISOAbbreviation>Mycologia</ISOAbbreviation></Journal><ArticleTitle>Phylogenetic relationships of Pythium and Phytophthora species based on ITS rDNA, cytochrome oxidase II and beta-tubulin gene sequences.</ArticleTitle><Pagination><MedlinePgn>410-22</MedlinePgn></Pagination><Abstract><AbstractText>Fifty-eight isolates representing 39 Pythium species and 17 isolates representing nine Phytophthora species were chosen to investigate intra- and intergeneric relationships with sequence analysis of three genomic areas. The internal transcribed spacer regions (ITS1 and ITS2), including the 5.8S gene of the ribosomal DNA were PCR amplified with the universal primers ITS1 and ITS4. On the other hand 563 bp of the cytochrome oxidase II (cox II) gene was amplified with the primer pair FM66 and FM58 for Pythium and FM75 and FM78 for Phytophthora. The 658 bp partial beta-tubulin gene was amplified with the forward primer BT5 and reverse primer BT6. Maximum parsimony analysis of the three DNA regions revealed four major clades, reflective of sporangial morphology. Clade 1 was composed of Pythium isolates that bear filamentous to lobulate sporangia. Clade 2 represents Pythium isolates that bear globose to spherical zoosporangia or spherical hyphal swellings. Meanwhile Phytophthora isolates were lumped into Clade 3 wherein the papillate, semipapillate and nonpapillate species occupied separate subclades. Lastly, Clade 4 was composed of Pythium species that bear subglobose sporangia resembling the papillate sporangia observed in Phytophthora. Hence a number of species (Ph. undulata, P. helicoides, P. ostracodes, P. oedochilum and P. vexans) have been proposed to be the elusive intermediate species in the Pythium-to-Phytophthora evolutionary line.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Villa</LastName><ForeName>Neilyn O</ForeName><Initials>NO</Initials><AffiliationInfo><Affiliation>Genetics and Molecular Biology Division, Institute of Biological Sciences, University of the Philippines Los Baños, College, Laguna, Philippines.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kageyama</LastName><ForeName>Koji</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Asano</LastName><ForeName>Takahiro</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Suga</LastName><ForeName>Haruhisa</ForeName><Initials>H</Initials></Author></AuthorList><Language>eng</Language><DataBankList 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MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2006</Year><Month>10</Month><Day>17</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2006</Year><Month>12</Month><Day>9</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2006</Year><Month>10</Month><Day>17</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">17040070</ArticleId><ArticleId IdType="doi">10.3852/mycologia.98.3.410</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Philippines</li></country></list><tree><noCountry><name sortKey="Asano, Takahiro" sort="Asano, Takahiro" uniqKey="Asano T" first="Takahiro" last="Asano">Takahiro Asano</name><name sortKey="Kageyama, Koji" sort="Kageyama, Koji" uniqKey="Kageyama K" first="Koji" last="Kageyama">Koji Kageyama</name><name sortKey="Suga, Haruhisa" sort="Suga, Haruhisa" uniqKey="Suga H" first="Haruhisa" last="Suga">Haruhisa Suga</name></noCountry><country name="Philippines"><noRegion><name sortKey="Villa, Neilyn O" sort="Villa, Neilyn O" uniqKey="Villa N" first="Neilyn O" last="Villa">Neilyn O. Villa</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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|wiki= Bois
|area= PhytophthoraV1
|flux= Main
|étape= Exploration
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|clé= pubmed:17040070
|texte= Phylogenetic relationships of Pythium and Phytophthora species based on ITS rDNA, cytochrome oxidase II and beta-tubulin gene sequences.
}}
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